Barkan Lab

Photosynthetic Mutant Library

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Maize Gene Name	Gene Function	Maize Locus ID	Rice Ortholog	Arabidopsis Ortholog	Allele	Seedling Color	Publications














At-ChlH					SALK_062726
At-THF1		GRMZM2G033493	NYC4 , Os07g0558500	At2g20890	THF1-2	WT
At-THF1		GRMZM2G033493	NYC4 , Os07g0558500	At2g20890	THF1-1	pg-cot
RBD1				At1g54500
TEST		test	test	test
Zm-rh3a		GRMZM2G415491	Os03g61220	AT5G26742	Zm-rh3a-1		Asakura, Y. et al. (2012)
					Zm-rh3a-2
					Zm-rh3a-3
					Zm-rh3a-4
					Zm-rh3a-5
					Zm-rh3a
					Zm-rh3a
cp33a		GRMZM2G026614		At3g52380
ppr13		GRMZM2G099604	Os03g58100	At2g02980	ppr13-1	ivm
ppr13		GRMZM2G099604	Os03g58100	At2g02980	ppr13-2	iv-stripey
uvr8		GRMZM2G003565	Os04g35570	At5g63860
ppr10	PPR protein; activates atpH translation, stabilizes atpH and psaJ mRNAs, binds atpI-atpH and psaJ-rpl33 intergenic regions. Classical name l15 (luteus 15)	GRMZM2G177169	Os05g19380	AT2G18940	ppr10-1	vpygm	Barkan, A. et al. (2012) Prikryl, J. et al. (2011) Pfalz, J. et al. (2009) Belcher, S. et al. (2015)
					ppr10-2	vpyg
					ppr10-3	vpyg
					ppr10-4
hcf108	assembly of the ATPase complex, BFA1 ortholog	GRMZM2G089696	Os03g55164	AT3G29185	hcf108-1	spgm	Zhang, L. et al. (2018)
Zm-mterf4	cp mTERF domain protein. Binds in vivo to multiple group II introns and promotes their splicing.	GRMZM2G029933	Os05g33500	At4g02990	Zm-mterf4-2	pyg	Hammani, K. et al. (2014) Belcher, S. et al. (2015)
					Zm-mterf4-1	iv / iv runty
					zm-mterf4
ak2	Ankyrin repeat protein (Arab - EMB506)	GRMZM2G019838	Os06g13000	At5g40160	ak2-1	iv
ak2	Ankyrin repeat protein (Arab - EMB506)	GRMZM2G019838	Os06g13000	At5g40160	ak2-2	iv
zb7	AtCLB6, zb7 in maize, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. ISPH enzyme involved in isoprenoid biosynthesis	GRMZM2G027059	Os03g52170	AT4G34350	zb7-1	pyg	Belcher, S. et al. (2015)
					zb7
					zb7-3	iv-vpyg
					zb7-mum2	vpy-vir
cfm4	CRM domain containing protein	GRMZM2G142740	Os09g19850	At4g29750	cfm4-1	iv-runty
cfm4	CRM domain containing protein	GRMZM2G142740	Os09g19850	At4g29750	cfm4-2	iv-runty
caf1	CRS2-associated factor 1; CRM domain protein,chloroplast group II intron splicing	GRMZM2G173923	Os01g31110	AT2G20020	caf1-1	iv	Ostheimer, GJ. et al. (2003) Schmitz-Linneweber, C. et al. (2005) Barkan, A. et al. (2007) Ostheimer, GJ. et al. (2005) Belcher, S. et al. (2015)
caf1		GRMZM2G173923	Os01g31110	AT2G20020	caf1-2	iv
caf2	CRS2-associated factor 2; CRM domain protein. chloroplast group II intron splicing	AC199526.5_FGT003	Os01g21990	AT1G23400	caf2-1	iv	Ostheimer, GJ. et al. (2003) Asakura, Y. et al. (2006) Barkan, A. et al. (2007) Ostheimer, GJ. et al. (2006) Belcher, S. et al. (2015)
Oil yellow (OY)	Chlorophyll synthesis, Magnesium chelatase I	GRMZM2G419806	Os03g36540	AT5G45930, AT4G18480	CHLI-1	yel or pyg	Sawers, RJ. et al. (2006) Belcher, S. et al. (2015)
					OY
					OY
					chlI-2	yel
					OY
Zm-chlh	Chlorophyll synthesis: magnesium-chelatase subunit H.	GRMZM2G323024	Os03g20700	AT5G13630	gun5-1	yel-m	Zoschke, R. et al. (2017)
					gun5-2	vpyg
					gun5-3	yellow
					gun5-4
crs1	Chloroplast RNA Splicing 1;founding member of CRM domain family. Binds atpF intron, promotes atpF splicing	GRMZM2G078412	Os08g27150	AT5G16180	crs1-1	spg	Till, B. et al. (2001) Jenkins, BD. et al. (1997) Ostersetzer, O. et al. (2005) Asakura, Y. et al. (2006) Barkan, A. et al. (2007) Belcher, S. et al. (2015)
					crs1-2	vpyg
					crs1-3	vpyg
					crs1-4	pg
					crs1-5	spg
					crs1-6	pg
crs2	Chloroplast RNA Splicing 2; required for splicing of chloroplast subgroup IIB introns. peptidyl tRNA hydrolase homolog.	GRMZM2G132021	Os01g04130	AT5G16140, AT5G38290	crs2-1	iv, vir	Jenkins, BD. et al. (2001) Ostheimer, GJ. et al. (2006) Jenkins, BD. et al. (1997) Ostheimer, GJ. et al. (2005) Ostheimer, GJ. et al. (2003) Belcher, S. et al. (2015)
crs2		GRMZM2G132021	Os01g04130	AT5G16140, AT5G38290	crs2-2	iv
wtf2	Chloroplast group II intron splicing, PORR domain. manuscript in preparation	Zm00001d013029	Os04g24710	At5g62990	wtf2-1	iv-vir
					wtf2-2	iv-vir
					wtf2-3	vpyg
					wtf2-4	vpyg
					wtf2-5	iv-vpyg
					wtf2-6	ivm
					wtf2-7	ivm
					wtf2-8	vpygm
					wtf2-9	pyg
					wtf2-10	vpygm
					wtf2-11	iv
Zm-rps9	Chloroplast ribosomal protein S9	AC234157.1_FGT002	Os03g55930	At1g74970	Zm-rps9-1	vpyg-vir
Zm-rps9	Chloroplast ribosomal protein S9	AC234157.1_FGT002	Os03g55930	At1g74970	Zm-rps9
ppr53	Chloroplast-localized PPR-SMR protein that binds to and stabilizes the 5� end of a pre-23S rRNA isoform and also promotes the stabilization and translation of a specific processed ndhA mRNA. The absence of PPR53 results in severely chlorotic seedlings, a strong reduction in chloroplast ribosomes and a global loss of chloroplast translation products.	GRMZM2G438524	Os03g63910	AT5G46580	ppr53		Zoschke, R. et al. (2016)
					ppr53-2	iv-vir
					ppr53-3	iv-vir
					ppr53
					ppr53-1	vpyg-vir
					ppr53-4	iv-vir
psa2	DnaJ-type zinc finger domain protein required for PSI assembly. PSI mutant. (Ortholog of EDA3)	GRMZM2G021687	Os08g36140	AT2G34860	psa2-1	spgm	Fristedt, R. et al. (2014) Belcher, S. et al. (2015) Shen, J. et al. (2017)
Zm-hcf107	HAT domain protein required to stabilize psbH 5? end and promote psbH translation. Binds psbH 5?UTR	GRMZM2G121960	Os03g19560	AT3G17040	Zm-hcf107-1	hcf	Hammani, K. et al. (2012) Belcher, S. et al. (2015) Sane, AP. et al. (2005)
					Zm-hcf107-2	hcf
					Zm-hcf107-3	hcf
					Zm-hcf107-4	hcf
psb1	HCF136 (High chlorophyll fluorescence 136) . Photosystem II assembly factor	GRMZM2G102838		AT5G23120	psb1-1	spg-hcf	Belcher, S. et al. (2015) Chotewutmontri, P. et al. (2020)
					psb1-2	unknown
					psb1-3	unknown
Zm-HEMC	HEMC ortholog. porphobilinogen deaminase. necrotic seedling phenotype.	GRMZM2G026117	Os02g07230	AT5G08280	Zm-HEMC-1	pyg-nec	Belcher, S. et al. (2015)
Zm-HEMC		GRMZM2G026117	Os02g07230	AT5G08280	Zm-HEMC		Belcher, S. et al. (2015)
iv186b	LEUCYL-TRNA SYNTHETASE, orthologous to Arabidopsis EMBRYO DEFECTIVE 2369	GRMZM5G858471	Os01g03020	AT4G04350	cps5-1		Belcher, S. et al. (2015)
					cps5-2	iv
					cps5
					cps5-3	iv
					cps5-4	vpygm
					cps5-5	iv-runty
Zm-apg1	MPBQ/MSBQ methyltransferase involved in plastoquinone synthesis	GRMZM2G082998	Os12g42090	AT3G63410	Zm-apg1-1	pg-grny	Belcher, S. et al. (2015)
					Zm-apg1-2	pg
					Zm-apg1-3	pyg
					Zm-apg1-4	pgm
ppp1	Maize Classical Gene: ppp1 (pyrophosphate-energized proton pump1), AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6); inorganic diphosphatase/ pyrophosphatase	GRMZM2G090718	Os02g52940	AT5G09650	ppp1-1	pyg
hcf472	Maize ortholog of Arabidopsis Pyg7. Required for PSI assembly. Shen et al, Plant Physiology 2017.	GRMZM5G809292		AT1G22700	hcf472	spg
Zm-murE	Maize ortholog of MurE; PEP associated protein required for PEP-mediated transcription.	GRMZM2G009070	Os10g40130	At1g63680	Zm-mure-1	pygm	Williams-Carrier, R. et al. (2014) Belcher, S. et al. (2015)
					Zm-mure-2	iv
					Zm-murE-3
					Zm-murE-4	pyg-vir
Zm-prin2	Maize ortholog of PRIN2; PEP associated protein required for PEP-mediated transcription	GRMZM2G119906	Os09g21460	AT1G10522	Zm-prin2-1	vpyg	Kieff, E. et al. (1979) Williams-Carrier, R. et al. (2014) Belcher, S. et al. (2015)
Zm-prin2		GRMZM2G119906	Os09g21460	AT1G10522	Zm-prin2-2	iv
Zm-ptac12	Maize ortholog of PTAC12; PEP associated protein required for PEP-mediated transcription	GRMZM5G897926	Os01g56350	AT2G34640	Zm-ptac12-1	vpygm	Williams-Carrier, R. et al. (2010) Belcher, S. et al. (2015)
					Zm-ptac12-2	vpyg
					Zm-ptac12
					undefined	undefined
					undefined	undefined
Zm-ptac2	Maize ortholog of PTAC2; PEP associated protein required for PEP-mediated transcription	GRMZM2G122116	Os03g60910	At1g74850	Zm-ptac2-1	vpyg	Williams-Carrier, R. et al. (2014) Belcher, S. et al. (2015)
					Zm-ptac2-2	iv
					Zm-ptac2-3	iv
pet2	Mediates heme attachment to cytochrome b6 (ortholog CCB2)	GRMZM2G087063	Os10g37840	AT5G52110	pet2-1	pyg	Williams-Carrier, R. et al. (2010) Voelker, R. et al. (1995) Belcher, S. et al. (2015)
					pet2-2	pyg
					pet2-3	pyg
					pet2-4	pg
					pet2-5	spg
					pet2-6	pyg

wtf4	No phenotype.	GRMZM2G350157	Os06g15550	At2g31290	wtf4-1	no phenotype
					wtf4-2	no phenotype
					wtf4-3	no phenotype
					wtf4-4	no phenotype
					wtf4
Zm-ptac17	No phenotype. (Ortholog of PTAC17). RIP-chip was done together with mTERF4 long ago. Came down in HCF173 coIP from thylakoid.	GRMZM2G180418	Os02g55630	At1g80480 , At1g15730	Zm-ptac17-1	no phenotype
orrm1	ORRM-domain protein, involved in cp RNA editing	GRMZM5G899787	Os02g49820	AT3G20930	orrm1-1	spg	Sun, T. et al. (2013) Belcher, S. et al. (2015)
					orrm1-2	spg
					orrm1-3	spg
w2	Organellar DNA polymerase gamma; Required for cpDNA replication.	GRMZM2G480171	Os08g07840, Os08g07850	AT1G50840, AT3G20540	w2-mum1	vpyg	Udy, DB. et al. (2012) Belcher, S. et al. (2015)
					w2-mum2	ivory-runty
					w2-Burnham	ivory

Zm-tab2	Ortholog of ATAB2 in Arabidopsis and TAB2 in Chlamydomonas. Required for PSI accumulation. Activates translation of cp psaB RNA in Chlamydomonas but not in maize.	GRMZM2G081955	Os02g39740	AT3G08010	Zm-tab2-1	pyg	Belcher, S. et al. (2015) Shen, J. et al. (2017)
					Zm-tab2-2	pyg
					tha12-3	pyg
					Zm-tab2-4	pygm
Zm-abcg11	Ortholog of Arabidopsis ABCG11/COF1/WBC11. Plasma membrane- localized ATP-binding cassette transporter; cutin transport to extracellular matrix	GRMZM2G177812	Os04g44610	AT1G17840	Zm-abcg11-1	leaves adhered toget	Belcher, S. et al. (2015)
					Zm-abcg11
					Zm-abcg11
Zm-s1	Ortholog of Arabidopsis BSF. Stabilizes processed RNA termini in the chloroplast petB-petD intergenic region	GRMZM2G087628	Os01g40640	At1g71720	Zm-s1-1	iv-vir	Bowman, SM. et al. (2013) Belcher, S. et al. (2015) Jiang, J. et al. (2019)
Zm-s1		GRMZM2G087628	Os01g40640	At1g71720	Zm-s1-2	iv-vir
Zm-era1	Ortholog of Arabidopsis ERA1. Required for cp ribosome accumulation. Putative cp ribosome assembly factor. ERA domain (IPR005662).	GRMZM2G158024	Os05g49220	At5g66470	iv-vir18-1	vpyg-vir	Belcher, S. et al. (2015)
					iv-vir18-2
					iv-vir18-3
					iv-vir18-4
					undefined	undefined
					Zm-era1-5	vpyg-virm
Zm-gun4	Ortholog of Arabidopsis GUN4; Mg-chelatase cofactor and porphyrin binding protein	GRMZM2G464328	Os11g16550	AT3G59400	gun4-1	pyg	Belcher, S. et al. (2015)
					gun4
					gun4
					gun4-2	yel
					Zm-gun4-3	yel-m
atp5	Ortholog of Arabidopsis PAB, involved in ATP synthase assembly. Mutant specifically lacks the ATP synthase.	GRMZM2G110258	Os03g01920	At4g34090	nta1-1	spg	Chotewutmontri, P. et al. (2020)
					nta1
					nta1-3	unknown
					nta1-4	unknown
					nta1-2	unknown
crp17	Ortholog of Arabidopsis PGR3. PPR protein that stabilizes 5'-end of cp petL RNA and is required for NDH accumulation. Additional functions in maize. PGR3 ortholog. Stabilizes 5'end of cp petL RNA and 3' end of rpl14 mRNA.	GRMZM2G372632	Os10g28600	AT4G31850	crp17-1	vpygm	Belcher, S. et al. (2015)
crp17		GRMZM2G372632	Os10g28600	AT4G31850	Zm-pgr3		Belcher, S. et al. (2015)
crp19	Ortholog of Arabidopsis PRDA1. cp nucleoid protein involved in PEP-mediated transcription; cpRNA defects in maize similar to other PEP-deficient mutants	GRMZM2G079452	Os11g23790	AT5G48470	Zm-prda1-1	vpyg/iv-vir	Belcher, S. et al. (2015)
					Zm-prda1-2
					Zm-prda1-3
ptac14	Ortholog of Arabidopsis PTAC14. PEP-associated protein, required for PEP-mediated transcription; cpRNA defects in maize similar to other PEP-deficient mutants. ptac14-2 x ptac14-3 are iv, both exon insertions.	GRMZM5G807767	Os05g50980	AT4G20130	ptac14-1	iv	Belcher, S. et al. (2015)
					ptac14-2	iv
					pTac14-3	iv
Zm-y3ip1	Ortholog of Arabidopsis Y3IP1. PSI assembly factor, cooperates with Ycf3	GRMZM2G002165	Os01g58470	AT5G44650	hcf148-1	pyg	Belcher, S. et al. (2015) Shen, J. et al. (2017)
					hcf148-2
					hcf148-3
					hcf148-4	pyg
					Zm-y3ip1-5
Zm-ycf54	Ortholog of barley/cyanobacterial Ycf54; subunit of Mg-protoporphyrin IX monomethyl ester cyclase	GRMZM2G010196	Os03g21370	AT5G58250	Zm-ycf54-1	pyg	Belcher, S. et al. (2015)
Zm-ycf54		GRMZM2G010196	Os03g21370	AT5G58250	Zm-ycf54-2	pg	Belcher, S. et al. (2015)
ppr102	P-type PPR protein. Highest expression near leaf base and in sxn. 4.	GRMZM2G012174	Os05g22870	At5g50280	ppr102-1
					ppr102-2
					ppr102-3
					ppr102-4
					ppr102
					ppr102-6	iv-runty
					ppr102
					ppr102-5
					ppr102-7
					ppr102-8
ppr36	P-type PPR. No phenotype. Highest expression in very leaf base. Coexpressed with mito editing factors in Arabidopsis. Probably mito.	GRMZM2G333678	Os11g14980	AT4G19191	ppr36-1	no pnenotype
ppr61	PPR protein	GRMZM2G341479	Os02g49830	AT1G09220	ppr61-1	iv
					ppr61
					ppr61
ppr2	PPR protein required for plastid ribosome accumulation.	GRMZM2G341621	Os03g19650	AT3G06430	ppr2-1	iv	Williams, PM. et al. (2003) Belcher, S. et al. (2015)
ppr2	PPR protein required for plastid ribosome accumulation.	GRMZM2G341621	Os03g19650	AT3G06430	ppr2-4	iv	Williams, PM. et al. (2003) Belcher, S. et al. (2015)
ppr4	PPR protein required for rps12 trans-splicing; binds rps12 intron 1.	GRMZM2G404066	Os04g58780	AT5G04810	ppr4-1	vpyg	Schmitz-Linneweber, C. et al. (2006) Belcher, S. et al. (2015)
ppr4		GRMZM2G404066	Os04g58780	AT5G04810	ppr4-2	spg
tpj1	PPR protein required for translation of the chloroplast psbJ RNA in maize. Orthologous to Arabidopsis LPE1, which is required for psbJ and psbN translation.	GRMZM2G056116	Os12g18640	AT3G46610	ppr66		Williams-Carrier, R. et al. (2019)
					tpj1-1
					tpj1-2	mild hcf
					ppr66
ppr6	PPR protein. No phenotype.	GRMZM2G093291	Os06g02120	At5g27270	ppr6-1	no phenotype
					ppr6-2	no phenotype
					ppr6-3	no phenotype
crp1	PPR protein; Activates petA and psaC translation; stabilizes processed petB, petD mRNAs; binds petA, psaC, petD 5'UTRs	GRMZM2G083950	Os07g36390	AT5G42310	crp1-1	pyg	Barkan, A. et al. (1994) Fisk, DG. et al. (1999) Schmitz-Linneweber, C. et al. (2005) Belcher, S. et al. (2015)
					crp1-2	pyg
					crp1-3	pyg
					crp1-4	pyg
					crp1-5	pyg
					crp1-6	pyg
					crp1-7	pyg
tha8	PPR protein; required for splicing ycf3-int2 and trnA introns and associates with those introns in vivo.	AC217965.2_FGT012		At3g27750	tha8-1	pyg	Khrouchtchova, A. et al. (2012) Belcher, S. et al. (2015)
					tha8-2	pyg
					tha8-3	pyg
					tha8-4	pyg
					tha8-5	pyg
					tha8-6	pyg
					tha8-7	pyg or pg
ppr5	PPR protein; stabilizes unspliced trnG precursor and stimulates its splicing; binds the trnG intron	GRMZM2G025409	Os02g51480	AT4G39620	ppr5-1	iv	Williams-Carrier, R. et al. (2008) Beick, S. et al. (2008) Belcher, S. et al. (2015)
ppr5		GRMZM2G025409	Os02g51480	AT4G39620	ppr5-2	pg
Zm-otp51	PPR-LAGLIDADG protein; required for splicing cp ycf3-int2 (Ortholog of otp51)	GRMZM2G325019	Os02g47360	At2g15820	Zm-otp51-1	pygm	Belcher, S. et al. (2015) Khrouchtchova, A. et al. (2012) Shen, J. et al. (2017)
					Zm-otp51-2	pygm
					Zm-otp51-3	pgm
					Zm-otp51-4	pyg
					Zm-otp51-5	pyg

atp4	PPR-SMR protein; activates atpB translation, binds atpB 5?UTR	GRMZM2G128665	Os03g11670	AT4G16390	atp4-1	spg	Zoschke, R. et al. (2012) Belcher, S. et al. (2015)
					atp4-2	spg
					atp4-3	spg

ppr-smr4	PPR/SMR protein. No phenotype.	GRMZM2G164202	Os02g02770	At2g17033	pprsmr4-1	no phenotype
psa3	PSI assembly factor. Shen et al, Plant Physiology 2017. Our PSA3 antibody does not work in Arabidopsis. Chlamy ortholog is Cre03.g183400.t1.1	GRMZM2G051403	Os05g45030	AT3G55250	spg184-1	spg	Shen, J. et al. (2017)
					spg184-3	wt
					spg184
					spg184
					spg184-4
					spg184-2	spg
psa1	Required for PSI accumulation. Harbors NifU domain implicated in Fe-S cluster assembly. Ortholog of Arabidopsis Nfu-IVa.	GRMZM2G100976	Os06g47940	AT4G25910	psa1-1	spg	Belcher, S. et al. (2015)
psa1		GRMZM2G100976	Os06g47940	AT4G25910	psa1-2	spg	Belcher, S. et al. (2015)
raf1	Rubisco Accumulation Factor1; promotes Rubisco assembly.	GRMZM2G457621	LOC_Os10g30870	AT3G04550, AT5G28500	raf1-1	pg	Feiz, L. et al. (2012) Belcher, S. et al. (2015)
					raf1-2	pg
					raf1-3	pg
raf2	Rubisco Accumulation Factor2; promotes Rubisco assembly.	GRMZM2G139123		At5g51110	raf2-1		Feiz, L. et al. (2014) Belcher, S. et al. (2015)
Zm-rbd1	Rubredoxin, involved in PSII accumulation RBD1 is At1g54500 see Calderon JBC 2013	GRMZM2G093815	Os07g08770	AT4G27990	Zm-rbd1-1	pyg-vir
Zm-rbd1		GRMZM2G093815	Os07g08770	AT4G27990	Zm-rbd1-2	pyg-vir
Zm-paac	TAAC, thylakoid ATP/ADP carrier	GRMZM2G178460	Os01g16040	AT5G01500, AT3G51870	Zm-paac-1	no phenotype
					Zm-paac-2	vpyg
					Zm-paac-3	vpyg
Zm-pyg7	TPR protein, PSI biogenesis, ortholog of pyg7 in Arabidopsis.	GRMZM5G809292	Os10g32300	AT1G22700	pg26-1	pg	Shen, J. et al. (2017)
					pg26-2	pgm
					pg26-3	pg
tha4	Thylakoid protein targeting: tat pathway	GRMZM2G472651	Os03g43430	AT5G28750	tha4-1	spg	Walker, MB. et al. (1999) Belcher, S. et al. (2015)
tha5	Thylakoid targeting. SecE subunit of protein translocation complex.	GRMZM2G300408	Os08g30830	AT4G14870	tha5-1	pg	Williams-Carrier, R. et al. (2010) Belcher, S. et al. (2015)
					tha5-2	pg
					tha5-3	pg
					tha5-4
not pyg18	Unknown function	GRMZM2G168375	Os01g74152	AT5G59480	pyg18-1	pyg
not pyg18	Unknown function	GRMZM2G168375	Os01g74152	AT5G59480	pyg18-2
csy1	Zm00001d000350, thylakoid protein translocase (ortholog CpSecY)	GRMZM5G809546	Os08g15460	AT2G18710	csy1-1	vpyg	Roy, LM. et al. (1998) Belcher, S. et al. (2015)
					csy1-2	vpyg
					csy1-3
crp11	cp 3'-tRNA processing endoribonuclease (ortholog of CPZ)	GRMZM5G802566	Os09g30466	AT2G04530	crp11-1	iv-vir grny
					crp11-2
					crp11
					crp11
					crp11
ZmClpP5	cp ATP-dependent Clp protease subunit 5. pale yellow phenotype confirmed by complementation crosses by Bailin Li group	GRMZM2G121456	Os03g19510	AT1G02560	clpP5-1	iv	Xing, A. et al. (2014) Belcher, S. et al. (2015)
					clpP5
					vyl	vpyg
					cplP5-4	pyg-vir
vdl1	cp DEAD box protein (ortholog of tobacco VDL helicase). Required for biogenesis of plastid translation machinery.	GRMZM2G415538	Os01g73900	AT5G19210	vdl1-1	iv & stripey
vdl1		GRMZM2G415538	Os01g73900	AT5G19210	vdl1-2	iv
ppdk	cp PPDK, pyruvate orthophosphate dikinase	GRMZM2G306345	Os03g31750	AT4G15530	ppdk-1	pgm	Belcher, S. et al. (2015)
					ppdk-2	pg
					ppdk-3	pg
ppr100	cp PPR protein: required for biogenesis of plastid translation machinery. Highest expression near leaf base.	GRMZM2G428579	Os02g02590	At2g01860	ppr100-1	iv
ppr100		GRMZM2G428579	Os02g02590	At2g01860	ppr100-2	iv
cfm1	cp RNA splicing factor, CRM domain containing protein	GRMZM5G813259	Os05g47850	At3g18390	cfm1-1	possibly embryo leth
wtf1	cp RNA splicing factor. Founding member of PORR domain family. Interacts with RNC1	GRMZM2G403797	Os05g49610	AT4G01037	wtf1-1	pg	Kroeger, TS. et al. (2009) Belcher, S. et al. (2015)
					wtf1-2	ivm
					wtf1-3	iv-runty
					wtf1-4	iv-runty
					wtf1-5	iv-vir
rnc1	cp RNAse III domain protein: required for the splicing of many chloroplast introns. Interacts with WTF1.	GRMZM2G035820	Os01g59510	AT4G37510	rnc1-1	spg	Watkins, KP. et al. (2007) Belcher, S. et al. (2015)
					rnc1-2	iv
					rnc1-3	iv-runty
					rnc1-4	vpyg
tha1	cp SecA homolog: required for thylakoid protein targeting	GRMZM5G880102?	Os01g21820	At4g01800	tha1-1	pyg	Settles, AM. et al. (2001) Voelker, R. et al. (1995) Voelker, R. et al. (1997) Belcher, S. et al. (2015)
cpx1	cp coproporphyrinogen oxidase (ortholog of LIN2; LESION INITIATION 2)	GRMZM5G870342	Os04g52130	AT1G03475	cpx1		Belcher, S. et al. (2015)
					cpx1-2	necrotic
					cpx1	pg-nec
cps1	cp cysteinyl-tRNA synthetase	GRMZM2G156565	Os09g38420	AT2G31170	cps1-1	pygm	Barkan, A. et al. (1993) Belcher, S. et al. (2015)
					cps1-2	pyg
					cps1-3
crp4	cp polynucleotide phosphorylase (PNPase), cpRNA processing and decay	GRMZM2G377761	Os07g07310	AT3G03710	crp4-1	pale green	Williams-Carrier, R. et al. (2010) Belcher, S. et al. (2015)
					crp4-2	spgm
					crp4-3	pygm
					crp4-4	spgm
pet3	cp protein involved in cytb6f assembly (ortholog is CCB4). Allelic to maize gene hcf6	Zm00001d002054	Os04g55690	AT1G59840	pet3-1	spg	Voelker, R. et al. (1995) Belcher, S. et al. (2015)
					pet3-2	pyg
					hcf6	spg-lethal
Zm-ccs1	cp protein required for the accumulation of the cyt b6f complex. (ortholog likely chlamydomonas CCS1). Involved in attaching heme to petA	GRMZM2G038301	Os03g55970	At1g49380	Zm-ccs1-1	pg	Belcher, S. et al. (2015)
					Zm-ccs1-2	pg
					Zm-ccs1-3	pyg
cptk1	cp thymidine kinase 1	GRMZM2G048821	Os03g02200	AT3G07800	cptk1-1	iv
					cptk1
					cptk1-3	WT
					cptk1-2
					cptk
Zm-ptac10	cp transcription. (ortholog of PTAC10) Contains S1 RNA-binding domain.	GRMZM2G091419	Os01g67570	At3g48500	Zm-ptac10-1	vpyg-mutable	Williams-Carrier, R. et al. (2014)
					Zm-ptac10-2	iv
					Zm-ptac10-3	vpyg
Zm-ptac18	cp transcription. (ortholog of PTAC18)	GRMZM2G306104	Os02g54360	At2g32180 , At2g32650	Zm-ptac18-1	spg
Zm-ptac18	cp transcription. (ortholog of PTAC18)	GRMZM2G306104	Os02g54360	At2g32180 , At2g32650	Zm-ptac18-2	spg
znfn1	cp transcription. zinc finger domain.	GRMZM2G086277	Os06g07020	At5g52010	znfn1-1	iv
					znfn1-2	iv
					znfn1-3	ivm
					znfn1-4
Zm-prep2	cp transit peptide degrading enzyme, (ortholog of ATPREP2)	GRMZM2G072861	Os02g52390	AT1G49630	Zm-prep2-1	iv-green-tip-m
Zm-prep2	cp transit peptide degrading enzyme, (ortholog of ATPREP2)	GRMZM2G072861	Os02g52390	AT1G49630	Zm-prep2-2
csr1	cpSRP receptor. Involved in thylakoid protein targeting (ortholog of CPFTSY)	Zm00001d042044	Os01g72800	AT2G45770	csr1-1	vpyg	Asakura, Y. et al. (2004) Belcher, S. et al. (2015)
					csr1-2	vpyg
					csr1-3	vpyg
					csr1-4	yelm
hcf106	cpTAT transport. GRMZM5G898735=hcf106 GRMZM2G151529=hcf106C	GRMZM5G898735	Os11g37130	AT5G52440
Zm-atpc	gamma subunit of chloroplast ATP synthase (ATPC1)	GRMZM2G048907	Os07g32880	AT4G04640	Zm-atpc-1	spg	Belcher, S. et al. (2015)
					Zm-atpc-2	unknown
					Zm-atpc-3	unknown
					Zm-atpc-4	spg
					Zm-atpc-5	vpygm
					Zm-atpc-6
Zm-rh3b	global cp Dead box RNA helicase involved in cp intron splicing and assembly of the 50S ribosomal subunit	AC198418.3_FGT005	Os03g61220	AT5G26742	Zm-rh3b-1	vpyg-vir	Asakura, Y. et al. (2012) Belcher, S. et al. (2015)
Zm-rh3b		AC198418.3_FGT005	Os03g61220	AT5G26742	Zm-rh3b-2	vpyg-vir	Asakura, Y. et al. (2012) Belcher, S. et al. (2015)
Zm-PPOX	lesion mimic phenotype, cp protoporphyrinogen oxidase, Ortholog of Arabidopsis PPOX/ PPO1.	GRMZM2G039396	Os01g18320	AT4G01690	Zm-ppox-1	pg-with lesions	Belcher, S. et al. (2015)
					Zm-ppox-2	necrotic
					Zm-ppox-3	unknown
why1	single-stranded nucleic acid binding protein. Multifunctional: promotes atpF splicing, 23S rRNA maturation, stabilizes cp genome.	GRMZM2G155662	Os06g05350	AT2G02740, AT1G14410	why1-2	grainy	Prikryl, J. et al. (2008) Belcher, S. et al. (2015)
why1		GRMZM2G155662	Os06g05350	AT2G02740, AT1G14410	why1-1	iv	Prikryl, J. et al. (2008) Belcher, S. et al. (2015)

Barkan Lab - 255 Klamath Hall - abarkan@uoregon.edu